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STAR Protocols

STAR Protocols

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Protocol for establishing CRISPR-Cas12a for efficient genome editing of Pseudomonas aeruginosa phages

Published:11 December 2024 DOI: 10.1016/j.xpro.2024.103488 PMID: 39666461
Bingjie Yan,?Yujia Liu,?Yumei Cai,?Yuqing Liu,?Yibao Chen

Abstract

We developed an efficient type V CRISPR-Cas12a system tailored specifically for Pseudomonas aeruginosa phages, showcasing its remarkable cleavage activity and the ability to precisely introduce genetic modifications, including point mutations, deletions, and insertions, into phage genomes. Here, we present a protocol for establishing CRISPR-Cas12a for genome editing of Pseudomonas aeruginosa phages. We describe steps for the construction of pCRISPR-12a plasmid and guide RNA and the utilization of the type V CRISPR-Cas12a system for precise genetic editing of phages. For complete details on the use and execution of this protocol, please refer to Chen et?al.1.

Substances (8)

Materials
Procduct Name CAS Molecular Formula Supplier Price
Sodium chloride 7647-14-5 ClNa 1689 suppliers $5.00-$6678.62
Calcium chloride 10043-52-4 CaCl2 1213 suppliers $5.00-$26371.00
TRIS hydrochloride 1185-53-1 C4H12ClNO3 841 suppliers $5.00-$13970.00
Magnesium sulfate heptahydrate 10034-99-8 Mg.O4S.7H2O 825 suppliers $10.00-$7150.00
Agar 9002-18-0 C14H24O9 811 suppliers $14.00-$4510.00
L-Arabinose 5328-37-0 C5H10O5 626 suppliers $5.00-$5500.00
T4 DNA LIGASE 9015-85-4 208 suppliers $103.00-$708.00
PEPTONE 91079-83-3 79 suppliers $108.00-$189.00

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